Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-quinone oxidoreductase subunit 3, chloroplastic | Rxycam_00711 | A9B477 | Negative | 678885 - 679274 | 14650.3 |
| transcriptional regulatory protein lnrk | Rxycam_00712 | P0AF30 | Positive | 679528 - 680157 | 23538.6 |
| hypothetical protein | Rxycam_00713 | Not Available | Positive | 680278 - 680607 | 12276.5 |
| hypothetical protein | Rxycam_00714 | Not Available | Positive | 680678 - 682801 | 76290.3 |
| arginine transport atp-binding protein artm | Rxycam_00715 | Q8YIT2 | Positive | 682810 - 683445 | 23290.9 |
| acetylornithine deacetylase | Rxycam_00716 | Q5HKI1 | Negative | 683447 - 684619 | 43077.3 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase 1 | Rxycam_00717 | Q5KUL0 | Negative | 684652 - 685932 | 45158.7 |
| atp synthase epsilon chain, sodium ion specific | Rxycam_00718 | Q1AVI0 | Negative | 686005 - 686442 | 16527.4 |
| atp synthase subunit beta | Rxycam_00719 | Q1AVH9 | Negative | 686442 - 687971 | 55301.4 |
| atp synthase gamma chain | Rxycam_00720 | Q1AVH8 | Negative | 687986 - 688852 | 31834.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
