Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| riboflavin biosynthesis protein ribd | Rxycam_00401 | O66534 | Positive | 381406 - 382536 | 40184.8 |
| riboflavin synthase | Rxycam_00402 | P50854 | Positive | 382517 - 383152 | 22609.2 |
| riboflavin biosynthesis protein ribba | Rxycam_00403 | B0KAI2 | Positive | 383142 - 384344 | 44290.6 |
| 6,7-dimethyl-8-ribityllumazine synthase | Rxycam_00404 | B0KAI3 | Positive | 384344 - 384898 | 19226.0 |
| 50s ribosomal protein l28 | Rxycam_00405 | Q1AW97 | Negative | 384849 - 385067 | 7860.63 |
| hypothetical protein | Rxycam_00406 | Q4L5S7 | Positive | 385220 - 386806 | 55934.7 |
| fatty acid-binding protein | Rxycam_00407 | Q8R9U5 | Positive | 386803 - 387618 | 29819.6 |
| atp-dependent dna helicase recg | Rxycam_00408 | Q55681 | Positive | 387674 - 389725 | 75645.6 |
| ribosomal rna small subunit methyltransferase d | Rxycam_00409 | O34331 | Positive | 389722 - 390264 | 19580.6 |
| phosphopantetheine adenylyltransferase | Rxycam_00410 | Q1AW92 | Positive | 390261 - 390755 | 17946.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
