Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pp_00385 | Rxycam_00391 | Not Available | Positive | 372241 - 373710 | Not Available |
| hypothetical protein | Rxycam_00392 | Not Available | Positive | 373723 - 374112 | 13883.8 |
| hypothetical protein | Rxycam_00393 | Not Available | Positive | 374109 - 374387 | 9975.82 |
| hypothetical protein | Rxycam_00394 | Not Available | Positive | 374384 - 374662 | 9831.63 |
| rna polymerase sigma factor sigf | Rxycam_00395 | P9WGI2 | Positive | 374659 - 375435 | 29631.2 |
| alanine--trna ligase | Rxycam_00396 | Q1AWA6 | Positive | 375480 - 378119 | 98533.8 |
| putative pre-16s rrna nuclease | Rxycam_00397 | Q1AWA5 | Positive | 378137 - 378538 | 14920.2 |
| endolytic murein transglycosylase | Rxycam_00398 | O34758 | Positive | 378535 - 379647 | 41191.8 |
| shikimate dehydrogenase (nadp(+)) | Rxycam_00399 | Q1AWA3 | Positive | 379649 - 380503 | 29834.2 |
| ribulose-phosphate 3-epimerase | Rxycam_00400 | O34557 | Positive | 380541 - 381215 | 23992.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
