Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| queuine trna-ribosyltransferase | Rxycam_00371 | A5D3G6 | Positive | 348681 - 349778 | 40184.5 |
| hypothetical protein | Rxycam_00372 | Not Available | Negative | 349765 - 350877 | 41230.1 |
| hypothetical protein | Rxycam_00373 | P33779 | Negative | 351175 - 351888 | 26948.6 |
| hypothetical protein | Rxycam_00374 | Not Available | Positive | 352067 - 352756 | 24869.4 |
| protein translocase subunit secdf | Rxycam_00375 | E6W4K8 | Positive | 352808 - 354271 | 52273.9 |
| protein translocase subunit secf | Rxycam_00376 | Q53956 | Positive | 354273 - 355175 | 33054.1 |
| k(+)/h(+) antiporter subunit khtu | Rxycam_00377 | O07536 | Negative | 355206 - 356420 | 43314.0 |
| k(+)/h(+) antiporter subunit khtt | Rxycam_00378 | O07535 | Negative | 356426 - 356926 | 18209.7 |
| hypothetical protein | Rxycam_00379 | Not Available | Positive | 357070 - 357504 | 15857.9 |
| putative protein kinase ubib | Rxycam_00380 | Q8Y275 | Positive | 357539 - 359182 | 60543.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
