Rubrobacter xylanophilus PRD-1

RodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Rubrobacteria

Order

Rubrobacterales

Family

Rubrobacteraceae

Genus

Rubrobacter

Description

Rubrobacter xylanophilus PRD-1 is a thermophilic, gram-positive bacterium characterized by its rod shape and aerobic metabolism. This organism is primarily found in the nonvolcanic hot springs of Arima Onsen, where it thrives at an optimal temperature of 60°C. As a heterotroph, R. xylanophilus derives its energy from organic substrates, allowing it to utilize the unique nutrient profiles present in its hot spring habitat. The cellular arrangement of R. xylanophilus consists of singles and pairs, which is indicative of its growth and division patterns in the hot spring environment. Notably, this bacterium is non-motile, suggesting that it relies on its surrounding environment for nutrient acquisition and may exhibit specialized adaptations to its thermal habitat. With only one replicon, R. xylanophilus possesses a streamlined genomic structure, which could be a factor in its efficient energy utilization and survival in extreme conditions. Its free-living biotic relationship indicates that it does not depend on other organisms for its lifecycle, further emphasizing its adaptability in the hot spring ecosystem. The presence of Rubrobacter xylanophilus in the Arima Onsen hot springs highlights the ecological role of thermophilic bacteria in such environments. These organisms contribute to nutrient cycling and may play a crucial part in the overall microbial community dynamics, influencing both the thermal and chemical landscape of their habitats. The study of R. xylanophilus could provide insights into microbial adaptations to extreme environments and their potential applications in biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassRubrobacteria
OrderRubrobacterales
FamilyRubrobacteraceae
GenusRubrobacter
SpeciesRubrobacter xylanophilus
StrainPRD-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature60
Temperature rangethermophilic
HabitatArima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring)
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Rubrobacter xylanophilus PRD-1, Chromosome

Gene Summary

Adenine Count

488973 bp

Thymine Count

493569 bp

Guanine Count

1071447 bp

Cytosine Count

1071596 bp

Genome Length

3127021 bp

Protein-coding Genes

3145 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosylamine--glycine ligaseRxycam_03052Q8G2B1Positive2986794 - 298807145881.6
adenylosuccinate lyaseRxycam_03053P74384Positive2988094 - 298940148568.4
phosphoribosylaminoimidazole-succinocarboxamide synthaseRxycam_03054A7GHA0Positive2989407 - 299012026800.1
phosphoribosylformylglycinamidine synthase subunit pursRxycam_03055Q55842Positive2990117 - 29903418162.95
phosphoribosylformylglycinamidine synthase subunit purqRxycam_03056Q1AXB7Positive2990338 - 299100023841.6
phosphoribosylformylglycinamidine synthase subunit purlRxycam_03057Q2RGU5Positive2990997 - 299318377081.2
amidophosphoribosyltransferaseRxycam_03058Q55038Positive2993183 - 299461351547.5
phosphoribosylformylglycinamidine cyclo-ligaseRxycam_03059Q7NMP5Positive2994617 - 299564235150.0
phosphoribosylglycinamide formyltransferaseRxycam_03060P08179Positive2995629 - 299621621374.7
bifunctional purine biosynthesis protein purhRxycam_03061Q2RGU9Positive2996213 - 299773653991.5

Displaying genes 3051 – 3060 of 3196 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.