Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | Rxycam_03002 | O64252 | Negative | 2941262 - 2942146 | 32923.9 |
| hth-type transcriptional repressor cytr | Rxycam_03003 | P25144 | Positive | 2942373 - 2943335 | 34618.7 |
| galactose/methyl galactoside import atp-binding protein mgla | Rxycam_03004 | Q1AXG5 | Positive | 2943332 - 2944831 | 54611.8 |
| ribose import permease protein rbsc | Rxycam_03005 | P0AGI3 | Positive | 2944824 - 2945777 | 32000.3 |
| ribose import binding protein rbsb | Rxycam_03006 | P36949 | Positive | 2945792 - 2946721 | 32461.7 |
| ribokinase | Rxycam_03007 | P0A9J7 | Positive | 2946724 - 2947629 | 30905.9 |
| d-ribose pyranase | Rxycam_03008 | Q1AXG1 | Positive | 2947626 - 2948015 | 13935.1 |
| hypothetical protein | Rxycam_03009 | P31064 | Negative | 2948012 - 2949262 | 42607.4 |
| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | Rxycam_03010 | Q8KZ94 | Negative | 2949354 - 2950175 | 28878.7 |
| fmn reductase (nadh) rutf | Rxycam_03011 | Q8GME2 | Negative | 2950183 - 2950809 | 22188.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
