Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide transport system permease protein dppb | Rxycam_02912 | P42062 | Positive | 2857940 - 2858902 | 35303.6 |
| putative peptide transport permease protein | Rxycam_02913 | P42063 | Positive | 2858921 - 2859853 | 33989.2 |
| oligopeptide transport atp-binding protein oppd | Rxycam_02914 | Q53193 | Positive | 2859855 - 2860874 | 37515.6 |
| vitamin b12 import atp-binding protein btud | Rxycam_02915 | P42065 | Positive | 2860871 - 2861908 | 38493.8 |
| putative ctpa-like serine protease | Rxycam_02916 | Q5HG01 | Positive | 2861955 - 2863199 | 44789.6 |
| hypothetical protein | Rxycam_02917 | Not Available | Positive | 2863263 - 2863724 | 16385.3 |
| hypothetical protein | Rxycam_02918 | Not Available | Positive | 2863796 - 2863975 | 6377.79 |
| rna polymerase sigma factor siga | Rxycam_02919 | P33656 | Negative | 2863972 - 2865066 | 41549.4 |
| hypothetical protein | Rxycam_02920 | Not Available | Positive | 2865156 - 2865944 | 28053.2 |
| hypothetical protein | Rxycam_02921 | O31472 | Negative | 2865982 - 2866449 | 17007.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
