Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ecf rna polymerase sigma factor sigw | Rxycam_02902 | P44790 | Positive | 2847736 - 2848347 | 23282.9 |
| hypothetical protein | Rxycam_02903 | Not Available | Positive | 2848344 - 2848844 | 17568.7 |
| hypothetical protein | Rxycam_02904 | Not Available | Positive | 2848841 - 2849899 | 36047.0 |
| hypothetical protein | Rxycam_02905 | P26906 | Positive | 2850175 - 2850630 | 16048.0 |
| oligopeptide transport atp-binding protein oppf | Rxycam_02906 | C0SP98 | Positive | 2850627 - 2851595 | 36013.3 |
| glutathione-binding protein gsib | Rxycam_02907 | Q6D3B0 | Positive | 2851700 - 2853277 | 59024.7 |
| glutathione transport system permease protein gsic | Rxycam_02908 | Q8FUX0 | Positive | 2853298 - 2854248 | 34062.5 |
| glutathione transport system permease protein gsid | Rxycam_02909 | P0AEG3 | Positive | 2854252 - 2855151 | 32211.0 |
| hypothetical protein | Rxycam_02910 | Not Available | Positive | 2855165 - 2856034 | 31194.4 |
| oligopeptide-binding protein appa | Rxycam_02911 | P42061 | Positive | 2856194 - 2857825 | 60685.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
