Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine-5'-phosphate glycosidase | Rxycam_02552 | Q1AYR4 | Positive | 2501600 - 2502508 | 31806.3 |
| 2-dehydro-3-deoxygluconokinase | Rxycam_02553 | Q53W83 | Positive | 2502505 - 2503416 | 31725.2 |
| hypothetical protein | Rxycam_02554 | P55552 | Positive | 2503449 - 2505719 | 84505.3 |
| (-)-gamma-cadinene synthase ((2z,6e)-farnesyl diphosphate cyclizing) | Rxycam_02555 | C7PLV2 | Negative | 2505720 - 2506694 | 36996.4 |
| putative oxidoreductase | Rxycam_02556 | Q94A68 | Negative | 2506806 - 2507759 | 34279.1 |
| hypothetical protein | Rxycam_02557 | Q9KWQ6 | Negative | 2507756 - 2508757 | 37042.6 |
| hypothetical protein | Rxycam_02558 | Q9XU75 | Negative | 2508819 - 2510390 | 59580.1 |
| serine/threonine-protein kinase pknb | Rxycam_02559 | Q8R9T6 | Positive | 2510659 - 2512017 | 49202.0 |
| hypothetical protein | Rxycam_02560 | Not Available | Negative | 2512021 - 2512389 | 13404.8 |
| hypothetical protein | Rxycam_02561 | Not Available | Negative | 2512488 - 2512976 | 17139.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
