Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major ferric iron-binding protein | Rxycam_00211 | P0A0Y4 | Negative | 200259 - 201368 | 39948.5 |
| putative deferrochelatase/peroxidase efen | Rxycam_00212 | P39597 | Negative | 201397 - 202689 | 47259.7 |
| putative iron uptake system component efem | Rxycam_00213 | Q4L8N2 | Negative | 202697 - 203584 | 32956.5 |
| ferrous iron permease efeu | Rxycam_00214 | Q8FJ36 | Negative | 203594 - 204433 | 29529.8 |
| udp-glucose 4-epimerase | Rxycam_00215 | O34886 | Positive | 204573 - 205526 | 34402.0 |
| hypothetical protein | Rxycam_00216 | Not Available | Positive | 205531 - 207561 | 72687.8 |
| hypothetical protein | Rxycam_00217 | Not Available | Positive | 207558 - 208496 | 31673.4 |
| hypothetical protein | Rxycam_00218 | Q5H8A4 | Positive | 208474 - 209910 | 53243.9 |
| polyprenol monophosphomannose synthase | Rxycam_00219 | Q58619 | Positive | 209907 - 210593 | 25441.1 |
| d-malate dehydrogenase | Rxycam_00220 | P42958 | Negative | 210590 - 211636 | 37321.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
