Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc-specific metallo-regulatory protein | Rxycam_00181 | P54479 | Positive | 174370 - 174783 | 14638.5 |
| rhomboid protease glpg | Rxycam_00182 | P54493 | Negative | 174746 - 175381 | 22205.8 |
| hypothetical protein | Rxycam_00183 | Not Available | Negative | 175437 - 175889 | 16330.4 |
| putative endonuclease 4 | Rxycam_00184 | A3CT71 | Positive | 175985 - 176857 | 30323.1 |
| hypothetical protein | Rxycam_00185 | P9WMH6 | Positive | 176867 - 177166 | 10376.6 |
| hypothetical protein | Rxycam_00186 | Not Available | Negative | 177424 - 177723 | 10588.5 |
| hypothetical protein | Rxycam_00187 | Not Available | Negative | 177720 - 178067 | 13654.1 |
| hypothetical protein | Rxycam_00188 | P28606 | Negative | 178162 - 179073 | 33062.0 |
| hypothetical protein | Rxycam_00189 | Q8XCI6 | Positive | 179131 - 179958 | 31517.3 |
| type iv prepilin signal peptidase pild | Rxycam_00190 | P72640 | Positive | 179959 - 180711 | 25905.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
