Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactose/methyl galactoside import atp-binding protein mgla | Rxycam_01870 | Q1ARR5 | Negative | 1807978 - 1809477 | 54873.6 |
| hth-type transcriptional regulator lutr | Rxycam_01871 | O07007 | Negative | 1809580 - 1810233 | 23641.5 |
| hypothetical protein | Rxycam_01872 | Q7LYW7 | Positive | 1810412 - 1811575 | 43666.4 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | Rxycam_01874 | P51831 | Negative | 1812521 - 1813279 | 26738.0 |
| d-galactonate dehydratase | Rxycam_01875 | D4GP40 | Negative | 1813310 - 1814566 | 45701.4 |
| putative oxidoreductase | Rxycam_01876 | Q9X248 | Negative | 1814568 - 1815350 | 27438.0 |
| 2-dehydro-3-deoxy-l-rhamnonate dehydrogenase (nad(+)) | Rxycam_01877 | P0DOW0 | Negative | 1815350 - 1816372 | 35299.4 |
| hypothetical protein | Rxycam_01878 | Not Available | Negative | 1816421 - 1816771 | 12619.8 |
| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase | Rxycam_01879 | Q9WYG0 | Positive | 1816868 - 1817623 | 26049.3 |
| l-fuconate dehydratase | Rxycam_01880 | Q6INX4 | Positive | 1817620 - 1818924 | 48042.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
