Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | Rxycam_01760 | P23974 | Negative | 1697993 - 1698739 | 27336.3 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | Rxycam_01761 | Q1AS21 | Negative | 1698894 - 1700624 | 61632.4 |
| isochorismate synthase menf | Rxycam_01762 | Q9M9V6 | Negative | 1700599 - 1702020 | 50951.3 |
| xylulose kinase | Rxycam_01763 | P09099 | Negative | 1702084 - 1703526 | 50407.8 |
| hypothetical protein | Rxycam_01764 | Q8E5N2 | Negative | 1703609 - 1704298 | 25372.0 |
| hypothetical protein | Rxycam_01765 | Not Available | Positive | 1704477 - 1704989 | 19556.2 |
| biotin transporter bioy | Rxycam_01766 | O57898 | Positive | 1705141 - 1705689 | 17822.4 |
| hypothetical protein | Rxycam_01767 | Not Available | Positive | 1705693 - 1706067 | 13535.8 |
| 5-aminovalerate aminotransferase davt | Rxycam_01768 | P63505 | Negative | 1706078 - 1707391 | 47164.8 |
| glutarate-semialdehyde dehydrogenase | Rxycam_01769 | Q88RC0 | Negative | 1707457 - 1708899 | 51948.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
