Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | Rxycam_00141 | Not Available | Negative | 139860 - 140117 | 9350.15 |
| imidazoleglycerol-phosphate dehydratase | Rxycam_00142 | Q1AX09 | Positive | 140229 - 140813 | 20922.6 |
| imidazole glycerol phosphate synthase subunit hish | Rxycam_00143 | Q7P0F1 | Positive | 140810 - 141427 | 22309.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Rxycam_00144 | Q1AX07 | Positive | 141414 - 142145 | 25589.6 |
| hypothetical protein | Rxycam_00145 | Not Available | Negative | 142163 - 142468 | 11064.8 |
| penicillin-binding protein 2d | Rxycam_00146 | P70997 | Positive | 142528 - 144558 | 73923.5 |
| hypothetical protein | Rxycam_00147 | Not Available | Positive | 144568 - 145020 | 16580.6 |
| nad-dependent malic enzyme | Rxycam_00148 | P16468 | Positive | 145097 - 146542 | 51741.6 |
| ferredoxin, 2fe-2s | Rxycam_00149 | O66511 | Positive | 146573 - 146875 | 11111.5 |
| nadh dehydrogenase-like protein | Rxycam_00150 | O05267 | Negative | 146872 - 148059 | 42947.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
