Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | Rxycam_01150 | P37574 | Negative | 1107046 - 1107552 | 18930.4 |
| putative trmh family trna/rrna methyltransferase | Rxycam_01151 | Q06753 | Negative | 1107537 - 1108244 | 24941.1 |
| cysteine--trna ligase | Rxycam_01152 | Q1AU11 | Negative | 1108251 - 1109663 | 53297.1 |
| glutamate--trna ligase 1 | Rxycam_01153 | Q1AU10 | Negative | 1109660 - 1110952 | 48943.9 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | Rxycam_01154 | Q1AU09 | Negative | 1110945 - 1111442 | 17637.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | Rxycam_01155 | Q1AU08 | Negative | 1111450 - 1112145 | 24427.6 |
| dna integrity scanning protein disa | Rxycam_01156 | Q0SQB6 | Negative | 1112148 - 1113233 | 40432.6 |
| dna repair protein rada | Rxycam_01157 | Q9KGG1 | Negative | 1113230 - 1114618 | 48566.8 |
| atp-dependent clp protease atp-binding subunit clpc1 | Rxycam_01158 | P24428 | Negative | 1114866 - 1117367 | 93755.5 |
| lysine--trna ligase | Rxycam_01159 | O29052 | Negative | 1117750 - 1119228 | 55136.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
