Rubrobacter xylanophilus PRD-1

RodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Rubrobacteria

Order

Rubrobacterales

Family

Rubrobacteraceae

Genus

Rubrobacter

Description

Rubrobacter xylanophilus PRD-1 is a thermophilic, gram-positive bacterium characterized by its rod shape and aerobic metabolism. This organism is primarily found in the nonvolcanic hot springs of Arima Onsen, where it thrives at an optimal temperature of 60°C. As a heterotroph, R. xylanophilus derives its energy from organic substrates, allowing it to utilize the unique nutrient profiles present in its hot spring habitat. The cellular arrangement of R. xylanophilus consists of singles and pairs, which is indicative of its growth and division patterns in the hot spring environment. Notably, this bacterium is non-motile, suggesting that it relies on its surrounding environment for nutrient acquisition and may exhibit specialized adaptations to its thermal habitat. With only one replicon, R. xylanophilus possesses a streamlined genomic structure, which could be a factor in its efficient energy utilization and survival in extreme conditions. Its free-living biotic relationship indicates that it does not depend on other organisms for its lifecycle, further emphasizing its adaptability in the hot spring ecosystem. The presence of Rubrobacter xylanophilus in the Arima Onsen hot springs highlights the ecological role of thermophilic bacteria in such environments. These organisms contribute to nutrient cycling and may play a crucial part in the overall microbial community dynamics, influencing both the thermal and chemical landscape of their habitats. The study of R. xylanophilus could provide insights into microbial adaptations to extreme environments and their potential applications in biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassRubrobacteria
OrderRubrobacterales
FamilyRubrobacteraceae
GenusRubrobacter
SpeciesRubrobacter xylanophilus
StrainPRD-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature60
Temperature rangethermophilic
HabitatArima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring)
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Rubrobacter xylanophilus PRD-1, Chromosome

Gene Summary

Adenine Count

488973 bp

Thymine Count

493569 bp

Guanine Count

1071447 bp

Cytosine Count

1071596 bp

Genome Length

3127021 bp

Protein-coding Genes

3145 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinRxycam_01150P37574Negative1107046 - 110755218930.4
putative trmh family trna/rrna methyltransferaseRxycam_01151Q06753Negative1107537 - 110824424941.1
cysteine--trna ligaseRxycam_01152Q1AU11Negative1108251 - 110966353297.1
glutamate--trna ligase 1Rxycam_01153Q1AU10Negative1109660 - 111095248943.9
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseRxycam_01154Q1AU09Negative1110945 - 111144217637.0
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseRxycam_01155Q1AU08Negative1111450 - 111214524427.6
dna integrity scanning protein disaRxycam_01156Q0SQB6Negative1112148 - 111323340432.6
dna repair protein radaRxycam_01157Q9KGG1Negative1113230 - 111461848566.8
atp-dependent clp protease atp-binding subunit clpc1Rxycam_01158P24428Negative1114866 - 111736793755.5
lysine--trna ligaseRxycam_01159O29052Negative1117750 - 111922855136.4

Displaying genes 1151 – 1160 of 3196 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.