Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas mediterranea |
| Strain | 9.1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1229552 bp
Thymine Count
1232435 bp
Guanine Count
1942212 bp
Cytosine Count
1941936 bp
Genome Length
6346235 bp
Protein-coding Genes
5363 genes
Non-Coding Genes
241 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05216476_0715 | Not Available | Negative | 792356 - 792634 | 10664.0 |
| rhs repeat-associated core domain-containing protein | SAMN05216476_0716 | P0DUH5 | Negative | 792636 - 797072 | 163877.0 |
| hypothetical protein | SAMN05216476_0717 | Not Available | Negative | 797085 - 797519 | 15959.2 |
| type vi secretion system secreted protein vgrg | SAMN05216476_0718 | Q9I741 | Negative | 797538 - 799469 | 72148.4 |
| type vi secretion system protein vasg | SAMN05216476_0719 | Q9I742 | Negative | 799628 - 802318 | 98264.8 |
| type vi secretion system protein imph | SAMN05216476_0720 | Not Available | Negative | 802311 - 803363 | 39630.8 |
| type vi secretion system protein impg | SAMN05216476_0721 | Q9I744 | Negative | 803327 - 805186 | 69275.6 |
| type vi secretion system protein impf | SAMN05216476_0722 | Q9I745 | Negative | 805183 - 805695 | 18755.4 |
| hypothetical protein | SAMN05216476_0723 | Not Available | Negative | 805689 - 806135 | 16431.7 |
| type vi secretion system (t6ss), amidase effector protein 4 | SAMN05216476_0724 | Not Available | Negative | 806132 - 806572 | 16775.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tomato pith necrosis | Causes | PMC12847849 |
| Pith necrosis | Causes | PMC12847849 |






