Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas mediterranea |
| Strain | 9.1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1229552 bp
Thymine Count
1232435 bp
Guanine Count
1942212 bp
Cytosine Count
1941936 bp
Genome Length
6346235 bp
Protein-coding Genes
5363 genes
Non-Coding Genes
241 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatine deiminase | SAMN05216476_0243 | C3K5U8 | Negative | 270437 - 271543 | 40652.7 |
| n-carbamoylputrescine amidase | SAMN05216476_0244 | Q93XI4 | Negative | 271547 - 272425 | 32930.8 |
| hydroxylysine kinase | SAMN05216476_0245 | Q7SY54 | Negative | 272647 - 275559 | 106365.0 |
| dtdp-glucose 4,6-dehydratase | SAMN05216476_0246 | P55294 | Positive | 275813 - 276895 | 40387.7 |
| glucose-1-phosphate thymidylyltransferase | SAMN05216476_0247 | P55257 | Positive | 276892 - 277767 | 32510.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | SAMN05216476_0248 | Q9HU21 | Positive | 277764 - 278309 | 20484.1 |
| dtdp-4-dehydrorhamnose reductase | SAMN05216476_0249 | Q2SYI1 | Positive | 278306 - 279187 | 32256.2 |
| histidine kinase | SAMN05216476_0250 | Q9HU20 | Positive | 279383 - 281191 | 66991.7 |
| two-component system, ntrc family, c4-dicarboxylate transport response regulator dctd | SAMN05216476_0251 | Q9HU19 | Positive | 281188 - 282579 | 50521.6 |
| thioesterase domain-containing protein, putative | SAMN05216476_0252 | P0ADQ4 | Positive | 282617 - 283072 | 17328.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tomato pith necrosis | Causes | PMC12847849 |
| Pith necrosis | Causes | PMC12847849 |






