Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Prophage p4 integrase | - | P76542 | Positive | 1658499 - 1658783 | 11020.9 |
| Attl | Not Available | Not Available | Positive | 1658824 - 1658846 | Not Available |
| Attl | Not Available | Not Available | Positive | 1658957 - 1659003 | Not Available |
| Integrase | - | P24218 | Positive | 1659029 - 1659316 | 11250.8 |
| Integrase family protein | - | Q980D9 | Positive | 1659366 - 1659623 | 9634.66 |
| hypothetical protein | - | Not Available | Positive | 1659824 - 1660147 | 11805.3 |
| hypothetical protein | - | Not Available | Positive | 1660147 - 1660494 | 13251.4 |
| hypothetical protein | - | Not Available | Positive | 1660545 - 1660697 | 5761.11 |
| hypothetical protein | - | Not Available | Positive | 1660694 - 1661020 | 12529.4 |
| hypothetical protein | - | Not Available | Positive | 1661159 - 1661326 | 6232.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
