Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase | KARP_02535 | Q1RJX7 | Positive | 2402169 - 2403110 | 35525.4 |
| uncharacterised protein | KARP_02536 | Not Available | Positive | 2403743 - 2403916 | 6882.57 |
| transposase | KARP_02537 | Not Available | Positive | 2403906 - 2404199 | 11302.2 |
| uncharacterised protein | KARP_02538 | Not Available | Negative | 2404479 - 2405483 | 37101.6 |
| uncharacterised protein | KARP_02539 | Not Available | Negative | 2405672 - 2407051 | 50335.7 |
| ankyrin repeat-containing protein | KARP_02540 | Not Available | Positive | 2407657 - 2407815 | 6098.38 |
| integrase | KARP_02541 | Not Available | Positive | 2408464 - 2408691 | 8563.03 |
| uncharacterised protein | KARP_02542 | Not Available | Positive | 2408727 - 2408864 | 5537.59 |
| integrase | KARP_02543 | Not Available | Positive | 2409304 - 2409462 | 5867.95 |
| transposase | KARP_02544 | Not Available | Negative | 2409477 - 2409701 | 8502.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
