Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | KARP_02485 | Not Available | Negative | 2348394 - 2350109 | 65604.9 |
| preprotein translocase seca subunit-like protein | KARP_02486 | Q15Q25 | Negative | 2350159 - 2351553 | 52657.5 |
| conjugative transfer protein | KARP_02487 | Not Available | Negative | 2352071 - 2352427 | 13635.9 |
| hnh endonuclease | KARP_02488 | P24200 | Negative | 2352637 - 2353014 | 14769.0 |
| reverse transcriptase | KARP_02489 | P19593 | Negative | 2353117 - 2354352 | 47567.0 |
| conjugal transfer protein traa | KARP_02490 | Q44349 | Positive | 2355035 - 2357479 | 93188.0 |
| conjugal transfer protein trai | KARP_02491 | P33655 | Positive | 2357598 - 2359109 | 56330.8 |
| conjugal transfer protein trai | KARP_02492 | Not Available | Positive | 2359123 - 2359674 | 20119.2 |
| transposase | KARP_02493 | B7NGZ6 | Positive | 2359726 - 2360637 | 35739.5 |
| conjugal transfer protein | KARP_02494 | P09130 | Negative | 2360647 - 2362338 | 63851.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
