Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is5 family transposase isot6 | KARP_01996 | Q00462 | Negative | 1868450 - 1868824 | 14619.1 |
| is5 family transposase isot6 | KARP_01997 | Q00462 | Negative | 1868836 - 1869273 | 17215.1 |
| threonylcarbamoyl-amp synthase | KARP_01998 | Q9UYB2 | Negative | 1869369 - 1870325 | 34678.0 |
| glycine--trna ligase subunit beta | KARP_01999 | A8F071 | Negative | 1870315 - 1872366 | 78705.9 |
| glycine--trna ligase subunit alpha | KARP_02000 | A8GUQ3 | Negative | 1872359 - 1873237 | 33719.1 |
| type surface antigen 56 (56 kda) | KARP_02001 | P37915 | Positive | 1873786 - 1875384 | 56841.9 |
| uncharacterised protein | KARP_02002 | P37917 | Positive | 1875614 - 1876342 | 26776.5 |
| udp-n-acetylmuramate--l-alanine ligase | KARP_02003 | A5CD22 | Positive | 1876510 - 1878018 | 55911.7 |
| udp-n-acetylenolpyruvoylglucosamine reductase | KARP_02004 | A5CD21 | Positive | 1877987 - 1878898 | 33605.5 |
| d-alanine--d-alanine ligase | KARP_02005 | Q4UKP1 | Positive | 1878876 - 1879850 | 36222.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
