Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| reverse transcriptase | KARP_01786 | P19593 | Positive | 1681327 - 1682550 | 46757.9 |
| hnh endonuclease | KARP_01787 | P24200 | Positive | 1682665 - 1683117 | 17715.7 |
| conjugative transfer protein | KARP_01788 | Not Available | Positive | 1683254 - 1683652 | 15213.6 |
| uncharacterised protein | KARP_01789 | Not Available | Negative | 1683740 - 1684120 | 14581.2 |
| uncharacterised protein | KARP_01790 | Not Available | Negative | 1684120 - 1684659 | 20154.6 |
| uncharacterised protein | KARP_01791 | Not Available | Negative | 1684601 - 1684903 | 11407.6 |
| uncharacterised protein | KARP_01792 | Not Available | Negative | 1684926 - 1685345 | 15956.0 |
| transposase | KARP_01793 | Not Available | Negative | 1685580 - 1686464 | 34108.8 |
| transposase | KARP_01794 | Not Available | Negative | 1686403 - 1686519 | 4469.38 |
| (p)pgpp hydrolase | KARP_01795 | Q2YN11 | Negative | 1686638 - 1687216 | 22872.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
