Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | KARP_01540 | Q8D5Z6 | Positive | 1452321 - 1453178 | 33227.4 |
| (p)pgpp hydrolase | KARP_01541 | Q2YN11 | Positive | 1453279 - 1453857 | 22905.4 |
| transposase | KARP_01542 | Not Available | Positive | 1453976 - 1454998 | 38801.4 |
| tpr repeat-containing protein 08 | KARP_01543 | Not Available | Negative | 1455189 - 1456391 | 45770.2 |
| uncharacterised protein | KARP_01544 | Not Available | Negative | 1456488 - 1456631 | 5436.78 |
| conjugative transfer protein | KARP_01545 | Not Available | Negative | 1456715 - 1456885 | 6661.08 |
| conjugative transfer protein | KARP_01546 | Not Available | Negative | 1456978 - 1457172 | 7615.88 |
| hnh endonuclease | KARP_01547 | P19593 | Negative | 1457382 - 1459097 | 66750.3 |
| conjugal transfer protein traa | KARP_01548 | Q44349 | Positive | 1459780 - 1461993 | 83797.4 |
| conjugal transfer protein trai | KARP_01549 | Not Available | Positive | 1462112 - 1464193 | 77371.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
