Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | KARP_01460 | Not Available | Negative | 1369161 - 1369469 | 11606.4 |
| transposase | KARP_01461 | Not Available | Positive | 1370147 - 1370464 | 12324.0 |
| is5 family transposase isot6 | KARP_01462 | Q00462 | Negative | 1370916 - 1371185 | 10562.8 |
| uracil-dna glycosylase | KARP_01463 | Q5SKC5 | Positive | 1371582 - 1372388 | 30064.6 |
| amino acid transporter | KARP_01464 | P60065 | Positive | 1374070 - 1375353 | 46823.6 |
| uncharacterised protein | KARP_01465 | Not Available | Negative | 1375693 - 1378611 | 107023.0 |
| is630 family transposase | KARP_01466 | Not Available | Positive | 1379044 - 1379439 | 15079.9 |
| cytochrome b | KARP_01467 | Q1RIA4 | Negative | 1380035 - 1381231 | 45806.5 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | KARP_01468 | Q92IR2 | Negative | 1381372 - 1382037 | 24431.8 |
| uncharacterised protein | KARP_01469 | Not Available | Negative | 1382149 - 1383288 | 44701.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
