Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transfer protein | KARP_01006 | Not Available | Negative | 928440 - 928805 | 14242.0 |
| peroxiredoxin | KARP_01007 | Q9ZMU4 | Negative | 928792 - 929085 | 10967.0 |
| integrase | KARP_01008 | P10487 | Negative | 929088 - 929864 | 29876.2 |
| integrase | KARP_01009 | Not Available | Negative | 929999 - 930226 | 8912.17 |
| Trna-ile | Not Available | Not Available | Positive | 931179 - 931255 | Not Available |
| replicative dna helicase | KARP_01011 | Not Available | Negative | 931939 - 932130 | 7536.48 |
| transposase | KARP_01012 | Not Available | Negative | 932445 - 933236 | 30938.5 |
| uncharacterised protein | KARP_01013 | Not Available | Negative | 934183 - 934392 | 7983.39 |
| 2-hydroxyacid dehydrogenase | KARP_01014 | Q8K9X7 | Negative | 934461 - 935933 | 54526.5 |
| cation:proton antiporter | KARP_01015 | B1I6I5 | Negative | 935943 - 937433 | 55336.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
