Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l2 | KARP_00906 | B3CT08 | Negative | 834412 - 835233 | 30508.2 |
| 50s ribosomal protein l23 | KARP_00907 | A8GVB6 | Negative | 835234 - 835530 | 10993.8 |
| 50s ribosomal protein l4 | KARP_00908 | A5CCL1 | Negative | 835527 - 836159 | 23698.0 |
| 50s ribosomal protein l3 | KARP_00909 | P48952 | Negative | 836174 - 836857 | 25107.2 |
| 30s ribosomal protein s10 | KARP_00910 | Q2W2J0 | Negative | 836841 - 837146 | 11552.3 |
| elongation factor tu | KARP_00911 | A5CCA0 | Negative | 837191 - 838375 | 42891.0 |
| Trna-gly | Not Available | Not Available | Positive | 838470 - 838543 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 838562 - 838647 | Not Available |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | KARP_00914 | Q9PC00 | Positive | 838839 - 839573 | 27516.6 |
| dna recombination/repair protein reca | KARP_00915 | A8F2Q0 | Positive | 839661 - 840731 | 38728.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
