Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit alpha | KARP_00886 | B3CT29 | Negative | 824000 - 825028 | 38082.3 |
| 30s ribosomal protein s11 | KARP_00887 | A5CCJ0 | Negative | 825076 - 825456 | 13664.7 |
| 30s ribosomal protein s13 | KARP_00888 | B3CT27 | Negative | 825466 - 825843 | 14184.6 |
| adenylate kinase | KARP_00889 | B3CT26 | Negative | 825923 - 826567 | 24016.4 |
| preprotein translocase subunit secy | KARP_00890 | Q68W98 | Negative | 826564 - 827871 | 48360.4 |
| 50s ribosomal protein l15 | KARP_00891 | B3CT24 | Negative | 827873 - 828364 | 18173.0 |
| 30s ribosomal protein s5 | KARP_00892 | A5CCJ5 | Negative | 828598 - 829116 | 18914.3 |
| 50s ribosomal protein l18 | KARP_00893 | B3CT21 | Negative | 829137 - 829511 | 14001.9 |
| 50s ribosomal protein l6 | KARP_00894 | Q9ZCS0 | Negative | 829525 - 830058 | 19314.0 |
| 30s ribosomal protein s8 | KARP_00895 | B3CT19 | Negative | 830086 - 830487 | 15165.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
