Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | KARP_00796 | Not Available | Positive | 740835 - 741041 | 7354.85 |
| uncharacterised protein | KARP_00797 | Not Available | Positive | 741142 - 741465 | 11977.4 |
| scaa autotransporter protein | KARP_00798 | O06653 | Negative | 742452 - 746996 | 161701.0 |
| is5 family transposase isot6 | KARP_00799 | Q00462 | Negative | 747649 - 748059 | 16080.7 |
| is5 family transposase isot6 | KARP_00800 | Q00462 | Negative | 748034 - 748390 | 13730.7 |
| multidrug resistance protein mdtl | KARP_00801 | P45123 | Negative | 748517 - 748789 | 10353.8 |
| mfs transporter | KARP_00802 | P28246 | Negative | 748800 - 749051 | 9244.48 |
| uncharacterised protein | KARP_00803 | Not Available | Positive | 749351 - 749698 | 13285.4 |
| uncharacterised protein | KARP_00804 | Not Available | Positive | 749817 - 749990 | 6778.03 |
| transposase | KARP_00805 | Not Available | Negative | 749987 - 750862 | 34134.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
