Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is5 family transposase isot6 | KARP_00646 | Q00462 | Positive | 611817 - 612170 | 13792.9 |
| is5 family transposase isot6 | KARP_00647 | Q00462 | Positive | 612265 - 612492 | 8776.8 |
| is5 family transposase isot6 | KARP_00648 | Not Available | Positive | 612470 - 612577 | 4062.16 |
| conjugal transfer protein | KARP_00649 | Not Available | Negative | 613416 - 613607 | 7222.43 |
| glutathione s-transferase | KARP_00650 | A0A0H3CDY2 | Positive | 614250 - 614918 | 26341.0 |
| uncharacterised protein | KARP_00651 | Not Available | Positive | 615056 - 615262 | 8074.04 |
| uncharacterised protein | KARP_00652 | Not Available | Negative | 615175 - 615375 | 7856.93 |
| transcription antitermination factor nusb | KARP_00653 | A8GV61 | Negative | 615613 - 616089 | 18166.0 |
| histidine--trna ligase | KARP_00654 | B3CTK8 | Negative | 616113 - 617384 | 48070.8 |
| outer membrane lipid asymmetry maintenance protein mlad | KARP_00655 | P45029 | Negative | 617387 - 617872 | 18252.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
