Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | KARP_00586 | Not Available | Positive | 552550 - 552726 | 6491.77 |
| uncharacterised protein | KARP_00587 | Not Available | Positive | 552854 - 553147 | 10697.8 |
| is5 family transposase isot6 | KARP_00588 | Q00462 | Positive | 553375 - 553731 | 13694.7 |
| is5 family transposase isot6 | KARP_00589 | Q00462 | Positive | 553743 - 554087 | 13134.3 |
| exodeoxyribonuclease iii | KARP_00590 | Not Available | Positive | 555166 - 555300 | 5121.19 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | KARP_00591 | Q4UN77 | Negative | 555734 - 556282 | 20396.0 |
| uncharacterised protein | KARP_00592 | Q9ZDT5 | Negative | 557725 - 558066 | 12340.4 |
| coproporphyrinogen iii oxidase | KARP_00593 | C3PM25 | Negative | 558207 - 559043 | 31944.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | KARP_00594 | B3CV38 | Negative | 559217 - 560566 | 50479.2 |
| peptidase s49 | KARP_00595 | Q8YFI5 | Positive | 560858 - 561775 | 33709.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
