Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| scad autotransporter protein | KARP_00576 | Not Available | Negative | 539992 - 542958 | 108902.0 |
| dna polymerase iii subunit gamma/tau | KARP_00577 | P09122 | Positive | 544017 - 545696 | 62358.7 |
| nucleoid-associated protein, ybab/ebfc family | KARP_00578 | A8GU86 | Positive | 545708 - 546268 | 20288.4 |
| zinc abc transporter atp-binding protein | KARP_00579 | Q68Y13 | Positive | 546537 - 547250 | 26647.1 |
| zinc abc transporter permease | KARP_00580 | Q8K9M7 | Positive | 547231 - 548019 | 28448.2 |
| reverse transcriptase | KARP_00581 | Not Available | Positive | 548788 - 549084 | 11534.2 |
| uncharacterised protein | KARP_00582 | Not Available | Positive | 550637 - 550726 | 3130.64 |
| is5 family transposase isot6 | KARP_00583 | Q00462 | Negative | 550986 - 551384 | 15533.2 |
| is5 family transposase isot6 | KARP_00584 | Q00462 | Negative | 551372 - 551749 | 14649.0 |
| integrase | KARP_00585 | P10487 | Positive | 551912 - 552505 | 23049.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
