Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein traa | KARP_00566 | Not Available | Negative | 530177 - 530647 | 17924.8 |
| conjugal transfer protein traa | KARP_00567 | Not Available | Negative | 530644 - 530805 | 6002.21 |
| conjugal transfer protein traa | KARP_00568 | Not Available | Negative | 530806 - 531171 | 14016.9 |
| transposase | KARP_00569 | Not Available | Negative | 532153 - 532356 | 7718.47 |
| 50s ribosomal protein l27 | KARP_00570 | B3CV08 | Negative | 534477 - 534746 | 9525.57 |
| 50s ribosomal protein l21 | KARP_00571 | B3CV07 | Negative | 534787 - 535113 | 12209.1 |
| phosphatase pap2 family protein | KARP_00572 | Not Available | Negative | 535253 - 535921 | 26014.4 |
| mbl fold metallo-hydrolase | KARP_00573 | Q7MUY1 | Positive | 536026 - 536775 | 28642.7 |
| exodeoxyribonuclease vii large subunit | KARP_00574 | A8EZN6 | Positive | 536996 - 538366 | 51065.2 |
| uncharacterised protein | KARP_00575 | Not Available | Positive | 538425 - 539900 | 56097.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
