Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | KARP_00556 | P10487 | Negative | 517928 - 519148 | 47064.6 |
| uncharacterised protein | KARP_00557 | Not Available | Negative | 519282 - 519482 | 7643.56 |
| cytochrome c oxidase subunit ii | KARP_00558 | Q1RI44 | Negative | 519600 - 520295 | 26352.3 |
| rdd family protein | KARP_00559 | Q9ZDA5 | Negative | 520507 - 520983 | 18271.0 |
| conjugal transfer protein | KARP_00560 | Q68XX6 | Positive | 522145 - 524361 | 83015.2 |
| conjugal transfer protein trai | KARP_00561 | Not Available | Positive | 524944 - 525111 | 5920.27 |
| is5 family transposase isot6 | KARP_00562 | Q00462 | Positive | 525265 - 525621 | 13651.6 |
| is5 family transposase isot6 | KARP_00563 | Q00462 | Positive | 525633 - 525806 | 6661.11 |
| excinuclease abc subunit a | KARP_00564 | Q92G31 | Negative | 525983 - 528856 | 106166.0 |
| transposase | KARP_00565 | Not Available | Positive | 529256 - 530065 | 31818.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
