Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | KARP_00506 | P43672 | Positive | 459774 - 461579 | 68998.1 |
| dna polymerase iii subunit alpha | KARP_00507 | Q1RKF9 | Negative | 461898 - 465602 | 140784.0 |
| valine--trna ligase | KARP_00508 | A5CCE0 | Negative | 465592 - 468156 | 98061.8 |
| 4-hydroxybenzoate octaprenyltransferase | KARP_00509 | Q9VHS7 | Positive | 468188 - 469063 | 32680.7 |
| uncharacterised protein | KARP_00510 | Not Available | Negative | 469333 - 470094 | 28093.2 |
| peptidase s66 | KARP_00511 | Q92I71 | Positive | 470446 - 471444 | 37619.6 |
| is5 family transposase isot6 | KARP_00512 | Q00462 | Negative | 472342 - 472716 | 14901.2 |
| is5 family transposase isot6 | KARP_00513 | Q00462 | Negative | 472670 - 472996 | 12777.4 |
| uncharacterised protein | KARP_00514 | Q9ZDZ8 | Negative | 473243 - 474442 | 44088.8 |
| uncharacterised protein | KARP_00515 | Not Available | Positive | 475058 - 476623 | 61086.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
