Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c | KARP_00456 | P00125 | Positive | 411609 - 412403 | 29946.1 |
| uncharacterised protein | KARP_00457 | Not Available | Negative | 412398 - 412532 | 4882.2 |
| ribonuclease ph | KARP_00458 | A8GW25 | Negative | 412900 - 413655 | 27785.1 |
| nucleotide exchange factor grpe | KARP_00459 | A8EY32 | Positive | 413784 - 414380 | 22442.2 |
| is630 family transposase | KARP_00460 | Not Available | Negative | 414905 - 415069 | 6480.77 |
| integrase | KARP_00461 | P06155 | Positive | 415507 - 416826 | 50888.3 |
| uncharacterised protein | KARP_00462 | Not Available | Positive | 416894 - 417217 | 11708.1 |
| conjugative transfer protein | KARP_00463 | Not Available | Positive | 417217 - 417768 | 20999.8 |
| uncharacterised protein | KARP_00464 | Not Available | Positive | 417765 - 418253 | 18462.4 |
| uncharacterised protein | KARP_00465 | Not Available | Positive | 418660 - 418995 | 12021.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
