Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein traa | KARP_00436 | Not Available | Negative | 393218 - 393646 | 16588.6 |
| conjugal transfer protein traa | KARP_00437 | Not Available | Negative | 393699 - 394022 | 12381.0 |
| reverse transcriptase | KARP_00438 | P19593 | Positive | 394703 - 395926 | 46743.9 |
| hnh endonuclease | KARP_00439 | P24200 | Positive | 396041 - 396490 | 17553.5 |
| helix-turn-helix domain-containing protein | KARP_00440 | Not Available | Negative | 396643 - 396804 | 6232.97 |
| uncharacterised protein | KARP_00441 | Not Available | Negative | 396801 - 398627 | 69924.0 |
| tpr repeat-containing protein 08 | KARP_00442 | F8RP11 | Positive | 399077 - 399217 | 5381.56 |
| tpr repeat-containing protein 08 | KARP_00443 | Not Available | Positive | 399317 - 399562 | 9422.22 |
| is5 family transposase isot6 | KARP_00444 | Q00462 | Positive | 399570 - 399698 | 5036.38 |
| transposase | KARP_00445 | Not Available | Positive | 399695 - 399811 | 4478.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
