Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| repeat-containing protein d | KARP_00416 | Not Available | Positive | 380954 - 382711 | 65974.9 |
| transposase | KARP_00417 | Not Available | Positive | 383703 - 383864 | 6317.49 |
| is5 family transposase isot6 | KARP_00418 | Q00462 | Positive | 383818 - 384192 | 14608.9 |
| uncharacterised protein | KARP_00419 | Not Available | Negative | 384152 - 384373 | 8602.63 |
| conjugative transfer protein | KARP_00420 | Not Available | Negative | 384484 - 385074 | 22314.4 |
| integrase | KARP_00421 | Not Available | Positive | 385139 - 385354 | 8628.76 |
| integrase | KARP_00422 | Not Available | Positive | 385436 - 385582 | 5118.43 |
| lipase lipb | KARP_00423 | Not Available | Positive | 386023 - 386916 | 33836.7 |
| integrase | KARP_00424 | Not Available | Negative | 387310 - 387426 | 4522.48 |
| integrase | KARP_00425 | Not Available | Negative | 387489 - 387743 | 10184.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
