Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s4 | KARP_00376 | B3CU42 | Positive | 344586 - 345209 | 23462.3 |
| uncharacterised protein | KARP_00377 | Not Available | Positive | 345288 - 345518 | 8461.21 |
| conjugal transfer protein | KARP_00378 | Not Available | Positive | 345618 - 345785 | 5807.1 |
| conjugal transfer protein | KARP_00379 | P18471 | Positive | 345917 - 346114 | 6864.84 |
| conjugative transfer protein | KARP_00380 | P18471 | Positive | 346151 - 346780 | 23966.6 |
| conjugative transfer protein trah | KARP_00381 | P15069 | Positive | 346784 - 347137 | 13188.7 |
| conjugal transfer protein trag | KARP_00382 | Not Available | Positive | 347378 - 347656 | 10489.9 |
| conjugal transfer protein | KARP_00383 | P09130 | Positive | 347628 - 349163 | 57847.5 |
| transposase | KARP_00384 | B7NGZ6 | Negative | 349173 - 350216 | 40144.6 |
| conjugal transfer protein trai | KARP_00385 | Not Available | Negative | 350268 - 350819 | 20103.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
