Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| terminase | KARP_00267 | Q9P9T5 | Negative | 240358 - 241779 | 54464.7 |
| 50s ribosomal protein l25/general stress protein ctc | KARP_00268 | B3CTF9 | Positive | 242111 - 242734 | 22927.1 |
| aminoacyl-trna hydrolase | KARP_00269 | Q4UMK4 | Positive | 242734 - 243294 | 20561.4 |
| gtp-binding protein ychf | KARP_00270 | P37518 | Positive | 243304 - 244404 | 40957.2 |
| uncharacterised protein | KARP_00271 | Not Available | Negative | 244452 - 244613 | 6273.82 |
| exodeoxyribonuclease iii | KARP_00272 | P0A1B0 | Positive | 245395 - 246189 | 30661.7 |
| uncharacterised protein | KARP_00273 | Not Available | Positive | 246682 - 246804 | 4808.91 |
| is5 family transposase isot6 | KARP_00274 | Q00462 | Positive | 247180 - 247617 | 17100.0 |
| is5 family transposase isot6 | KARP_00275 | Q00462 | Positive | 247629 - 248003 | 14611.1 |
| is5 family transposase isot6 | KARP_00276 | Q00462 | Negative | 249267 - 249659 | 15453.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
