Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methyltransferase | KARP_00217 | Q58015 | Positive | 195020 - 195715 | 26908.1 |
| rna-binding protein | KARP_00218 | Not Available | Positive | 196085 - 196621 | 20592.6 |
| rna-binding protein | KARP_00219 | Not Available | Positive | 196599 - 196769 | 6537.2 |
| replicative dna helicase | KARP_00220 | Q92HG8 | Negative | 196759 - 198090 | 49293.3 |
| uncharacterised protein | KARP_00221 | Not Available | Negative | 198099 - 199814 | 67065.2 |
| uncharacterised protein | KARP_00222 | Not Available | Negative | 199947 - 200087 | 5607.12 |
| preprotein translocase subunit yajc | KARP_00223 | Q1RIN2 | Positive | 200705 - 201085 | 14128.1 |
| protein translocase subunit secd | KARP_00224 | Q4UKW3 | Positive | 201082 - 202644 | 57671.2 |
| is5 family transposase isot6 | KARP_00225 | Q00462 | Positive | 203851 - 204039 | 7164.78 |
| uncharacterised protein | KARP_00226 | Not Available | Positive | 204103 - 204207 | 4006.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
