Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | KARP_00127 | Not Available | Negative | 119072 - 119215 | 5374.71 |
| conjugative transfer protein | KARP_00128 | Not Available | Negative | 119299 - 119754 | 17526.5 |
| conjugal transfer protein traa | KARP_00129 | P20085 | Positive | 120034 - 121017 | 37902.1 |
| conjugal transfer protein trad | KARP_00130 | Not Available | Positive | 121265 - 121528 | 10242.2 |
| transposase | KARP_00131 | Not Available | Negative | 121596 - 122570 | 37428.8 |
| (p)ppgpp synthetase | KARP_00132 | Q9AYT5 | Negative | 122692 - 122910 | 8796.83 |
| (p)pgpp hydrolase | KARP_00133 | Q2YN11 | Negative | 122915 - 123268 | 13781.1 |
| atp-binding protein | KARP_00134 | P35164 | Negative | 123369 - 124226 | 33215.6 |
| atp-binding protein | KARP_00135 | Q8E3C7 | Negative | 124201 - 124977 | 29908.9 |
| uncharacterised protein | KARP_00136 | Not Available | Positive | 125669 - 127537 | 72410.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
