Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trag | KARP_00087 | Not Available | Positive | 76682 - 76858 | 6098.88 |
| uncharacterised protein | KARP_00088 | Not Available | Positive | 76845 - 76979 | 5141.41 |
| conjugal transfer protein | KARP_00089 | P22708 | Positive | 76985 - 78739 | 66449.9 |
| transposase | KARP_00090 | B7NGZ6 | Negative | 78749 - 79768 | 39502.9 |
| conjugal transfer protein trai | KARP_00091 | Q44363 | Negative | 79768 - 81774 | 74599.0 |
| conjugal transfer protein traa | KARP_00092 | Q44363 | Negative | 82041 - 83603 | 58900.7 |
| conjugal transfer protein traa | KARP_00093 | Q44363 | Negative | 83649 - 84899 | 47823.2 |
| reverse transcriptase | KARP_00094 | P19593 | Positive | 85582 - 86817 | 47567.0 |
| hnh endonuclease | KARP_00095 | P24200 | Positive | 86920 - 87297 | 14769.0 |
| conjugative transfer protein | KARP_00096 | Not Available | Positive | 87508 - 87963 | 17524.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
