Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein traa | KARP_00057 | P14565 | Negative | 56485 - 57153 | 25481.8 |
| reverse transcriptase | KARP_00058 | P19593 | Positive | 57835 - 58812 | 37041.2 |
| 18 kda heat shock protein | KARP_00059 | Q4UKR8 | Positive | 58944 - 59402 | 17914.1 |
| hnh endonuclease | KARP_00060 | Not Available | Positive | 59656 - 59940 | 10748.3 |
| conjugative transfer protein | KARP_00061 | Not Available | Positive | 60150 - 60506 | 13658.9 |
| ankyrin repeat-containing protein 17 | KARP_00062 | Not Available | Negative | 60659 - 61387 | 27067.1 |
| guanosine polyphosphate pyrophosphohydrolase | KARP_00063 | O67012 | Negative | 61857 - 62471 | 23877.3 |
| Trna-pro | Not Available | Not Available | Positive | 62920 - 62996 | Not Available |
| transposase | KARP_00065 | Not Available | Positive | 63688 - 63831 | 5543.98 |
| is5 family transposase isot6 | KARP_00066 | Q00462 | Negative | 63838 - 64197 | 14023.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
