Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | KARP_00037 | Not Available | Positive | 33565 - 34440 | 34093.9 |
| uncharacterised protein | KARP_00038 | Not Available | Positive | 34973 - 35764 | 28902.9 |
| transposase | KARP_00039 | Not Available | Positive | 36592 - 36876 | 11548.3 |
| transposase | KARP_00040 | Not Available | Positive | 37071 - 37466 | 14693.1 |
| multidrug abc transporter atp-binding protein | KARP_00041 | Q57180 | Negative | 37481 - 39259 | 67661.8 |
| ump kinase | KARP_00042 | A5CD80 | Negative | 39309 - 40061 | 27744.7 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | KARP_00043 | B3CVD3 | Negative | 40290 - 41381 | 40115.6 |
| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligase | KARP_00044 | O05953 | Negative | 41371 - 42780 | 52284.2 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | KARP_00045 | Q92H59 | Negative | 42777 - 44246 | 54390.3 |
| penicillin-binding protein | KARP_00046 | B8H0A0 | Negative | 44233 - 45984 | 65770.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
