Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trad | KARP_00027 | Not Available | Positive | 25481 - 25651 | 6880.68 |
| transposase | KARP_00028 | Not Available | Negative | 25719 - 26633 | 35451.5 |
| (p)pgpp hydrolase | KARP_00029 | O67012 | Negative | 26755 - 27180 | 16576.3 |
| dna helicase | KARP_00030 | Q9ZD08 | Negative | 27496 - 27828 | 12750.9 |
| uncharacterised protein | KARP_00031 | Not Available | Positive | 28178 - 29749 | 61322.9 |
| replicative dna helicase | KARP_00032 | Q68WJ2 | Positive | 29758 - 31194 | 53443.2 |
| ankyrin | KARP_00033 | P46530 | Positive | 31434 - 32063 | 23650.0 |
| membrane protein | KARP_00034 | Not Available | Positive | 32110 - 32616 | 18578.2 |
| dna methyltransferase | KARP_00035 | P04043 | Negative | 32620 - 32760 | 5398.4 |
| membrane protein | KARP_00036 | Not Available | Negative | 32998 - 33201 | 7477.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
