Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Head-tail adaptor protein | KARP_02207 | Not Available | Negative | 2069172 - 2069513 | 13517.3 |
| uncharacterised protein | KARP_02208 | Not Available | Negative | 2069513 - 2070058 | 21012.8 |
| Phage major capsid protein | KARP_02209 | Not Available | Negative | 2070092 - 2071207 | 42038.4 |
| Phage prohead protease | KARP_02210 | P49860 | Negative | 2071219 - 2071773 | 20651.7 |
| chromosomal replication initiation protein dnaa | KARP_00001 | C3PP41 | Positive | 1 - 1410 | 53729.0 |
| dna polymerase iii subunit beta | KARP_00002 | Q92I37 | Positive | 1429 - 2727 | 49113.1 |
| type vi secretion protein | KARP_00003 | Q9ZDN8 | Positive | 2977 - 3657 | 26581.3 |
| p-type conjugative transfer protein virb9 | KARP_00004 | Q6G2B3 | Positive | 3641 - 4078 | 17394.9 |
| type vi secretion protein | KARP_00005 | Q7WDT6 | Positive | 4078 - 5607 | 55549.6 |
| type vi secretion protein | KARP_00006 | Q6FYW0 | Positive | 5607 - 6596 | 36812.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
