Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | KARP_01745 | Not Available | Negative | 1654800 - 1655438 | 24898.2 |
| Is1381 transposase protein b | KARP_01746 | Q00462 | Negative | 1655425 - 1655688 | 10253.6 |
| Is1381 transposase protein a | KARP_01747 | Q00462 | Negative | 1655788 - 1656165 | 14572.7 |
| uncharacterised protein | KARP_01748 | Not Available | Negative | 1656254 - 1656910 | 26017.1 |
| transposase | KARP_01749 | Not Available | Positive | 1657182 - 1657451 | 10672.3 |
| Is110-like element is621 family transposase | KARP_01750 | P19257 | Negative | 1657467 - 1657892 | 15616.6 |
| Is110-like element is621 family transposase | KARP_01751 | P20665 | Negative | 1657849 - 1658421 | 21746.3 |
| transposase | KARP_01752 | Not Available | Positive | 1658638 - 1658844 | 8396.48 |
| Prophage p4 integrase | KARP_01753 | P76542 | Positive | 1659261 - 1659545 | 11020.9 |
| Attl | Not Available | Not Available | Positive | 1659719 - 1659765 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
