Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 1142466 - 1142480 | Not Available |
| Integrase | KARP_01226 | P10487 | Positive | 1142473 - 1142898 | 16728.3 |
| Attr | Not Available | Not Available | Positive | 1148973 - 1148985 | Not Available |
| Attl | Not Available | Not Available | Positive | 1634993 - 1635006 | Not Available |
| integrase | KARP_01730 | Not Available | Negative | 1642341 - 1642484 | 5351.51 |
| integrase | KARP_01731 | Not Available | Negative | 1642531 - 1642758 | 8912.17 |
| Attl | Not Available | Not Available | Positive | 1643066 - 1643078 | Not Available |
| uncharacterised protein | KARP_01732 | Not Available | Negative | 1643130 - 1643696 | 22375.1 |
| uncharacterised protein | KARP_01733 | Not Available | Negative | 1643944 - 1644471 | 20601.2 |
| uncharacterised protein | KARP_01734 | Not Available | Negative | 1644513 - 1645067 | 21712.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
