Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rickettsiales
Family
Rickettsiaceae
Genus
Orientia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rickettsiales |
| Family | Rickettsiaceae |
| Genus | Orientia |
| Species | Orientia tsutsugamushi |
| Strain | Karp |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
853497 bp
Thymine Count
855674 bp
Guanine Count
377721 bp
Cytosine Count
381814 bp
Genome Length
2468706 bp
Protein-coding Genes
2771 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | KARP_00350 | Not Available | Negative | 322865 - 323098 | 8913.06 |
| mfs transporter permease | KARP_00351 | Q1RIL0 | Positive | 323748 - 325010 | 46924.0 |
| sodium:pantothenate symporter | KARP_00352 | Q92911 | Positive | 325026 - 326429 | 50876.2 |
| Attr | Not Available | Not Available | Positive | 327200 - 327212 | Not Available |
| uncharacterised protein | KARP_00353 | Not Available | Positive | 327443 - 327568 | 4749.9 |
| conjugal transfer protein | KARP_00354 | Not Available | Negative | 327797 - 328378 | 22218.8 |
| uncharacterised protein | KARP_00355 | Not Available | Negative | 328421 - 328747 | 11802.7 |
| conjugative transfer protein | KARP_00356 | Not Available | Negative | 328814 - 329032 | 8498.76 |
| conjugative transfer protein | KARP_00357 | Not Available | Negative | 329118 - 329357 | 8946.98 |
| integrase | KARP_00358 | Not Available | Negative | 329551 - 329721 | 6551.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Scrub typhus | Causes | PMC11039911 |
| Scrub typhus | Causes | PMC13464350 |
| Scrub typhus | Causes | PMC6005640 |
| Scrub typhus | Causes | PMC8460164 |
