Shewanella oneidensis MR-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella oneidensis MR-1 is a freshwater bacterium notable for its versatility in electron transfer and metabolic processes. This organism is equipped with flagella, which contribute to its motility in aquatic environments. It possesses two replicons, indicating a complex genomic architecture that may facilitate its adaptability and survival in diverse conditions. The genome of S. oneidensis MR-1 is documented in two key accession numbers: AE014299.2 and AE014300.1. This genomic information provides insights into its genetic makeup and potential metabolic pathways. S. oneidensis MR-1 is well-studied for its ability to reduce metals and generate electricity, making it a model organism in bioremediation and bioenergy research. Ecologically, S. oneidensis MR-1 plays a significant role in biogeochemical cycling, particularly in freshwater environments. Its metabolic capabilities enable it to interact with various electron acceptors, contributing to the breakdown of organic matter and influencing nutrient cycling in aquatic ecosystems. The presence of this bacterium in freshwater habitats highlights its importance in maintaining ecological balance and its potential applications in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella oneidensis
StrainMR-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shewanella oneidensis MR-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella oneidensis MR-1, Complete Genome

Gene Summary

Adenine Count

1343980 bp

Thymine Count

1341654 bp

Guanine Count

1143548 bp

Cytosine Count

1140621 bp

Genome Length

4969811 bp

Protein-coding Genes

3947 genes

Non-Coding Genes

267 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mu phage periplasmic protein of unknown functionSO_2670Not AvailablePositive2798399 - 279884515910.3
Secretion activator proteinSO_2671Not AvailablePositive2798922 - 279951221738.8
Hypothetical proteinSO_2672Not AvailablePositive2799512 - 27997729735.65
Hypothetical proteinSO_2673Not AvailablePositive2799757 - 280036522142.2
C4-type zinc finger proteinSO_2674Not AvailablePositive2800365 - 28005808338.0
Hypothetical proteinSO_2675Not AvailablePositive2800580 - 280088211520.2
Hypothetical proteinSO_2676Q9T1W8Positive2800891 - 280118110956.2
Hypothetical proteinSO_2677P44223Positive2801191 - 280177221210.6
Hypothetical proteinSO_2678Not AvailablePositive2801772 - 28019667345.98
Portal proteinSO_2679P44224Positive2801969 - 280352858443.0

Displaying genes 71 – 80 of 4342 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1905 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1905 metabolites

Health Effects

No health effects information available for this bacterium.